Gm52907 Gene Detail

Summary

• Symbol
  Gm52907
• Name
  predicted gene, 52907

• Feature Type
  lncRNA gene
• IDs
  MGI:6367389
  NCBI Gene: 115490416
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:83752917-83763156 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  321 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6367389	lncRNA gene	Chr6:83752917-83763156 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm52907
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  3

• NCBI Gene
  115490416

Representative Sequences			Length	Strain/Species
genomic	115490416	NCBI Gene Model | MGI Sequence Detail	10240	C57BL/6J
transcript	NR_168046	RefSeq | MGI Sequence Detail	1343	ZRU/MplStud

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm52907:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57375	Chr6:83752620-83752633 (+)	-290 bp
Tssr1911	Chr6:83752910-83752923 (+)	0 bp