Gm52945 Pseudogene Detail

Summary

• Symbol
  Gm52945
• Name
  predicted gene 52845

• Feature Type
  pseudogene
• IDs
  MGI:6387026
  NCBI Gene: 115487368
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:171725631-171733821 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6387026	pseudogene	Chr1:171725631-171733821 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm52945
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  115487368

Representative Sequences			Length	Strain/Species
genomic	115487368	NCBI Gene Model | MGI Sequence Detail	8191	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:237231 Guo H, et al., Deletion of Slam locus in mice reveals inhibitory role of SLAM family in NK cell responses regulated by cytokines and LFA-1. J Exp Med. 2016 Sep 19;213(10):2187-207
• Latest
  J:328788 Tang Z, et al., Inflammatory macrophages exploit unconventional pro-phagocytic integrins for phagocytosis and anti-tumor immunity. Cell Rep. 2021 Dec 14;37(11):110111

TSS for Gm52945:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10145	Chr1:171724487-171724510 (+)	-1,132 bp
Tssr10146	Chr1:171726592-171726615 (+)	973 bp