Gm52992 Gene Detail

Summary

• Symbol
  Gm52992
• Name
  predicted gene, 52992

• Feature Type
  lncRNA gene
• IDs
  MGI:6388876
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr14:24132189-24206278 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2000 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388876	lncRNA gene	Chr14:24132189-24206278 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm52992
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000118519 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118519	Ensembl Gene Model | MGI Sequence Detail	74090	C57BL/6J
transcript	ENSMUST00000238857	Ensembl | MGI Sequence Detail	1190	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm52992:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124574	Chr14:24132145-24132151 (+)	-41 bp
Tssr124575	Chr14:24132173-24132189 (+)	-8 bp
Tssr124576	Chr14:24132200-24132220 (+)	21 bp
Tssr124577	Chr14:24149638-24149671 (+)	17,466 bp
Tssr124578	Chr14:24150231-24150242 (+)	18,048 bp
Tssr124579	Chr14:24150354-24150361 (+)	18,169 bp
Tssr124580	Chr14:24154245-24154261 (+)	22,064 bp
Tssr124581	Chr14:24158887-24158889 (+)	26,699 bp