Gm53013 Gene Detail

Summary

• Symbol
  Gm53013
• Name
  predicted gene, 53013

• Feature Type
  lncRNA gene
• IDs
  MGI:6388901
• Alliance
  gene page
• Transcription Start Sites
  37 TSS

Location &
Maps

• Sequence Map
  ChrX:60159984-60336090 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3119 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388901	lncRNA gene	ChrX:60159984-60336090 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm53013
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000118604 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118604	Ensembl Gene Model | MGI Sequence Detail	176107	C57BL/6J
transcript	ENSMUST00000232361	Ensembl | MGI Sequence Detail	2536	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53013:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161068	ChrX:60159965-60160003 (+)	0 bp
Tssr161069	ChrX:60163901-60163916 (+)	3,925 bp
Tssr161070	ChrX:60164094-60164105 (+)	4,116 bp
Tssr161071	ChrX:60164109-60164129 (+)	4,135 bp
Tssr161072	ChrX:60164428-60164449 (+)	4,455 bp
Tssr5626	ChrX:60167148-60167152 (+)	7,166 bp
Tssr161073	ChrX:60171557-60171566 (+)	11,578 bp
Tssr161074	ChrX:60171572-60171585 (+)	11,595 bp
Tssr161075	ChrX:60171606-60171615 (+)	11,627 bp
Tssr161076	ChrX:60224726-60224734 (+)	64,746 bp
Tssr161077	ChrX:60226849-60226865 (+)	66,873 bp
Tssr161078	ChrX:60226867-60226889 (+)	66,894 bp
Tssr161079	ChrX:60226894-60226921 (+)	66,924 bp
Tssr161080	ChrX:60226928-60226940 (+)	66,950 bp
Tssr161081	ChrX:60227063-60227072 (+)	67,084 bp
Tssr161082	ChrX:60227081-60227092 (+)	67,103 bp
Tssr161083	ChrX:60227158-60227169 (+)	67,180 bp
Tssr161084	ChrX:60227283-60227406 (+)	67,361 bp
Tssr161085	ChrX:60227411-60227423 (+)	67,433 bp
Tssr161086	ChrX:60227474-60227482 (+)	67,494 bp
Tssr161087	ChrX:60227496-60227515 (+)	67,522 bp
Tssr161088	ChrX:60227522-60227539 (+)	67,547 bp
Tssr161089	ChrX:60227545-60227556 (+)	67,567 bp
Tssr5627	ChrX:60227612-60227628 (+)	67,636 bp
Tssr161090	ChrX:60229014-60229032 (+)	69,039 bp
Tssr161091	ChrX:60229123-60229169 (+)	69,162 bp
Tssr161092	ChrX:60229237-60229252 (+)	69,261 bp
Tssr161093	ChrX:60229282-60229300 (+)	69,307 bp
Tssr161094	ChrX:60229306-60229340 (+)	69,339 bp
Tssr161095	ChrX:60229347-60229375 (+)	69,377 bp
Tssr161096	ChrX:60229386-60229402 (+)	69,410 bp
Tssr161097	ChrX:60229454-60229481 (+)	69,484 bp
Tssr161098	ChrX:60229484-60229495 (+)	69,506 bp
Tssr161099	ChrX:60229600-60229615 (+)	69,624 bp
Tssr161100	ChrX:60229643-60229659 (+)	69,667 bp
Tssr161101	ChrX:60229664-60229672 (+)	69,684 bp
Tssr161102	ChrX:60229736-60229752 (+)	69,760 bp