Rr78 Other Genome Feature Detail

Summary

• Symbol
  Rr78
• Name
  regulatory region 78
• Synonyms
  SBE4

• Feature Type
  enhancer
• IDs
  MGI:6472625
• Regulates expression of
  Shh (1 regulated gene)

Location &
Maps

• Sequence Map
  Chr5:29148090-29149932 bp

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  3
• Genomic Mutations
  2 involving Rr78
• Find Mice (IMSR)
  0 strains or lines available

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:282343 Sagai T, et al., SHH signaling mediated by a prechordal and brain enhancer controls forebrain organization. Proc Natl Acad Sci U S A. 2019 Nov 19;116(47):23636-23642

Rr78 regulates expression of:

Feature	Feature Type	Location	Reference
Shh, sonic hedgehog	protein coding gene	Chr5:28661838-28672099 (-)	J:282343