Mascrna Gene Detail

Summary

• Symbol
  Mascrna
• Name
  Malat1-associated small cytoplasmic RNA

• Feature Type
  scRNA gene
• IDs
  MGI:6695700
  NCBI Gene: 109146451
• Alliance
  gene page
• Transcription Start Sites
  21 TSS

Location &
Maps

• Sequence Map
  Chr19:5845952-5846009 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6695700	scRNA gene	Chr19:5845952-5846009 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  109146451

Representative Sequences			Length	Strain/Species
genomic	109146451	NCBI Gene Model | MGI Sequence Detail	58	C57BL/6J
transcript	NR_144621	RefSeq | MGI Sequence Detail	58	Not Specified

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Mascrna:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157663	Chr19:5847931-5847942 (-)	-1,928 bp
Tssr157662	Chr19:5847872-5847881 (-)	-1,868 bp
Tssr157661	Chr19:5847767-5847788 (-)	-1,769 bp
Tssr157660	Chr19:5847746-5847755 (-)	-1,742 bp
Tssr157659	Chr19:5847593-5847659 (-)	-1,617 bp
Tssr157658	Chr19:5847490-5847555 (-)	-1,514 bp
Tssr157657	Chr19:5847438-5847449 (-)	-1,435 bp
Tssr5416	Chr19:5847338-5847343 (-)	-1,332 bp
Tssr157656	Chr19:5847316-5847329 (-)	-1,314 bp
Tssr157655	Chr19:5847286-5847296 (-)	-1,282 bp
Tssr157654	Chr19:5847249-5847270 (-)	-1,251 bp
Tssr157653	Chr19:5847206-5847216 (-)	-1,202 bp
Tssr157652	Chr19:5847089-5847132 (-)	-1,102 bp
Tssr157651	Chr19:5846952-5846992 (-)	-963 bp
Tssr157650	Chr19:5846898-5846922 (-)	-901 bp
Tssr5415	Chr19:5846862-5846894 (-)	-869 bp
Tssr157649	Chr19:5846839-5846857 (-)	-839 bp
Tssr157648	Chr19:5846739-5846765 (-)	-743 bp
Tssr157647	Chr19:5846573-5846598 (-)	-577 bp
Tssr157646	Chr19:5846411-5846511 (-)	-452 bp
Tssr157645	Chr19:5846381-5846409 (-)	-386 bp