Gm53207 Gene Detail

Summary

• Symbol
  Gm53207
• Name
  predicted gene, 53207

• Feature Type
  lncRNA gene
• IDs
  MGI:6721499
  NCBI Gene: 115486907
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:128161351-128167718 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  297 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6721499	lncRNA gene	Chr8:128161351-128167764 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm53207
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000120963 (Evidence)
• NCBI Gene
  115486907

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120963	Ensembl Gene Model | MGI Sequence Detail	6368	C57BL/6J
transcript	ENSMUST00000246666	Ensembl | MGI Sequence Detail	524	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm53207:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83543	Chr8:128167672-128167708 (-)	28 bp
Tssr83542	Chr8:128167656-128167668 (-)	56 bp
Tssr83541	Chr8:128166749-128166766 (-)	960 bp
Tssr83540	Chr8:128166620-128166621 (-)	1,097 bp