Gm53252 Pseudogene Detail

Summary

• Symbol
  Gm53252
• Name
  predicted gene, 53252

• Feature Type
  pseudogene
• IDs
  MGI:6721578
  NCBI Gene: 118567330
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:131365211-131439168 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1528 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6721578	pseudogene	Chr1:131365211-131439168 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  2

• NCBI Gene
  118567330

Representative Sequences			Length	Strain/Species
genomic	118567330	NCBI Gene Model | MGI Sequence Detail	73958	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm53252:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13586	Chr1:131439161-131439171 (-)	2 bp
Tssr13585	Chr1:131423127-131423154 (-)	16,027 bp
Tssr13584	Chr1:131418006-131418010 (-)	21,160 bp
Tssr13583	Chr1:131405573-131405592 (-)	33,585 bp
Tssr13582	Chr1:131400359-131400367 (-)	38,805 bp