Gm53533 Gene Detail

Summary

• Symbol
  Gm53533
• Name
  predicted gene, 53533

• Feature Type
  lncRNA gene
• IDs
  MGI:6722118
  NCBI Gene: 118567713
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:62568156-62573363 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  275 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722118	lncRNA gene	Chr9:62568156-62573680 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm53533
  

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000120158 (Evidence)
• NCBI Gene
  118567713

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120158	Ensembl Gene Model | MGI Sequence Detail	5208	C57BL/6J
transcript	ENSMUST00000241674	Ensembl | MGI Sequence Detail	445	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53533:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90063	Chr9:62573363-62573370 (-)	-4 bp
Tssr90062	Chr9:62573352-62573359 (-)	7 bp
Tssr90061	Chr9:62573345-62573351 (-)	15 bp
Tssr90060	Chr9:62573328-62573344 (-)	27 bp
Tssr90059	Chr9:62573310-62573325 (-)	45 bp