Gm53546 Gene Detail

Summary

• Symbol
  Gm53546
• Name
  predicted gene, 53546

• Feature Type
  lncRNA gene
• IDs
  MGI:6722143
  NCBI Gene: 118567732
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr1:34011620-34041590 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1329 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722143	lncRNA gene	Chr1:34011620-34041590 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118567732

Representative Sequences			Length	Strain/Species
genomic	118567732	NCBI Gene Model | MGI Sequence Detail	29971	C57BL/6J
transcript	XR_004935969	RefSeq | MGI Sequence Detail	3456	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm53546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6162	Chr1:34013732-34013752 (+)	2,122 bp
Tssr6163	Chr1:34013811-34013818 (+)	2,195 bp
Tssr6164	Chr1:34013825-34013829 (+)	2,207 bp
Tssr6165	Chr1:34015002-34015005 (+)	3,384 bp
Tssr6166	Chr1:34030091-34030099 (+)	18,475 bp