Gm53562 Gene Detail

Summary

• Symbol
  Gm53562
• Name
  predicted gene, 53562

• Feature Type
  lncRNA gene
• IDs
  MGI:6722175
  NCBI Gene: 118567753
• Alliance
  gene page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr1:74432585-74437570 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722175	lncRNA gene	Chr1:74432585-74437570 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118567753

Representative Sequences			Length	Strain/Species
genomic	118567753	NCBI Gene Model | MGI Sequence Detail	4986	C57BL/6J
transcript	XR_004936176	RefSeq | MGI Sequence Detail	2773	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm53562:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12312	Chr1:74436185-74436216 (-)	1,369 bp
Tssr164679	Chr1:74435744-74435757 (-)	1,819 bp
Tssr164678	Chr1:74435088-74435112 (-)	2,470 bp
Tssr12311	Chr1:74434738-74434749 (-)	2,826 bp
Tssr12310	Chr1:74434080-74434103 (-)	3,478 bp
Tssr12309	Chr1:74433856-74433868 (-)	3,708 bp
Tssr164677	Chr1:74433839-74433850 (-)	3,725 bp
Tssr12308	Chr1:74433818-74433831 (-)	3,745 bp
Tssr12307	Chr1:74433203-74433243 (-)	4,347 bp
Tssr164676	Chr1:74433052-74433059 (-)	4,514 bp
Tssr12306	Chr1:74433013-74433040 (-)	4,543 bp