Gm53582 Gene Detail

Summary

• Symbol
  Gm53582
• Name
  predicted gene, 53582

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:6722214
  NCBI Gene: 118567777
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr10:86854790-86894693 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1430 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722214	protein coding gene	Chr10:86853099-86894693 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm53582
  

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000135453 (Evidence)
• NCBI Gene
  118567777

Representative Sequences			Length	Strain/Species
genomic	118567777	NCBI Gene Model | MGI Sequence Detail	39904	C57BL/6J
transcript	XM_036156127	RefSeq | MGI Sequence Detail	1052	C57BL/6J
polypeptide	XP_036012020	RefSeq | MGI Sequence Detail	232	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53582:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98804	Chr10:86894228-86894238 (-)	460 bp
Tssr98803	Chr10:86894185-86894213 (-)	494 bp
Tssr98802	Chr10:86893801-86893811 (-)	887 bp
Tssr98801	Chr10:86893779-86893798 (-)	904 bp
Tssr98800	Chr10:86893768-86893777 (-)	920 bp