Gm53594 Gene Detail

Summary

• Symbol
  Gm53594
• Name
  predicted gene, 53594

• Feature Type
  lncRNA gene
• IDs
  MGI:6722234
  NCBI Gene: 118567796
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr1:150040941-150052218 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  442 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722234	lncRNA gene	Chr1:150040941-150052218 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118567796

Representative Sequences			Length	Strain/Species
genomic	118567796	NCBI Gene Model | MGI Sequence Detail	11278	C57BL/6J
transcript	XR_004936348	RefSeq | MGI Sequence Detail	1292	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm53594:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9319	Chr1:150040881-150040898 (+)	-51 bp
Tssr9320	Chr1:150040936-150040957 (+)	6 bp
Tssr9321	Chr1:150040964-150040979 (+)	31 bp
Tssr9322	Chr1:150043163-150043174 (+)	2,228 bp
Tssr9323	Chr1:150043204-150043213 (+)	2,268 bp
Tssr9324	Chr1:150051593-150051599 (+)	10,655 bp

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