Gm53854 Gene Detail

Summary

• Symbol
  Gm53854
• Name
  predicted gene, 53854

• Feature Type
  lncRNA gene
• IDs
  MGI:6722745
  NCBI Gene: 118568138
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:38529031-38620157 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3086 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722745	lncRNA gene	Chr14:38524841-38620157 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm53854
  

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000141514 (Evidence)
• NCBI Gene
  118568138

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000141514	Ensembl Gene Model | MGI Sequence Detail	91127	C57BL/6J
transcript	ENSMUST00000365648	Ensembl | MGI Sequence Detail	906	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53854:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128148	Chr14:38620151-38620156 (-)	3 bp
Tssr128147	Chr14:38602956-38602973 (-)	17,192 bp
Tssr128146	Chr14:38555401-38555414 (-)	64,749 bp
Tssr128145	Chr14:38555362-38555374 (-)	64,789 bp