Gm53901 Gene Detail

Summary

• Symbol
  Gm53901
• Name
  predicted gene, 53901

• Feature Type
  lncRNA gene
• IDs
  MGI:6722837
  NCBI Gene: 118568208
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:77743143-77748410 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  260 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722837	lncRNA gene	Chr15:77743143-77748410 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  118568208

Representative Sequences			Length	Strain/Species
genomic	118568208	NCBI Gene Model | MGI Sequence Detail	5268	C57BL/6J
transcript	XR_004939001	RefSeq | MGI Sequence Detail	1029	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm53901:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131881	Chr15:77742122-77742140 (+)	-1,012 bp