Gm53957 Gene Detail

Summary

• Symbol
  Gm53957
• Name
  predicted gene, 53957

• Feature Type
  lncRNA gene
• IDs
  MGI:6722949
  NCBI Gene: 118568279
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr16:44689253-44856725 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  5044 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722949	lncRNA gene	Chr16:44689253-44856725 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  3

• NCBI Gene
  118568279

Representative Sequences			Length	Strain/Species
genomic	118568279	NCBI Gene Model | MGI Sequence Detail	167473	C57BL/6J
transcript	XR_004939357	RefSeq | MGI Sequence Detail	366	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm53957:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141207	Chr16:44851547-44851552 (-)	5,175 bp
Tssr4881	Chr16:44851499-44851504 (-)	5,223 bp
Tssr4880	Chr16:44850617-44850625 (-)	6,104 bp
Tssr141206	Chr16:44845764-44845773 (-)	10,956 bp
Tssr141205	Chr16:44839314-44839356 (-)	17,390 bp
Tssr141204	Chr16:44820121-44820138 (-)	36,595 bp