Gm54023 Gene Detail

Summary

• Symbol
  Gm54023
• Name
  predicted gene, 54023

• Feature Type
  lncRNA gene
• IDs
  MGI:6723077
  NCBI Gene: 118568362
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr18:68477051-68492483 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  486 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723077	lncRNA gene	Chr18:68477051-68492483 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  118568362

Representative Sequences			Length	Strain/Species
genomic	118568362	NCBI Gene Model | MGI Sequence Detail	15433	C57BL/6J
transcript	XR_004939941	RefSeq | MGI Sequence Detail	1155	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm54023:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151789	Chr18:68477474-68477489 (+)	431 bp
Tssr151790	Chr18:68477521-68477536 (+)	478 bp
Tssr151791	Chr18:68477553-68477589 (+)	520 bp
Tssr151792	Chr18:68477594-68477606 (+)	549 bp
Tssr151793	Chr18:68477844-68477859 (+)	801 bp