Gm54042 Gene Detail

Summary

• Symbol
  Gm54042
• Name
  predicted gene, 54042

• Feature Type
  lncRNA gene
• IDs
  MGI:6723115
  NCBI Gene: 118568390
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:53388468-53409338 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  727 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723115	lncRNA gene	Chr18:53388468-53409338 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm54042
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118568390

Representative Sequences			Length	Strain/Species
genomic	118568390	NCBI Gene Model | MGI Sequence Detail	20871	C57BL/6J
transcript	XR_004940047	RefSeq | MGI Sequence Detail	19456	C57BL/6J

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Gm54042:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151089	Chr18:53401621-53401637 (+)	13,161 bp
Tssr151090	Chr18:53408901-53408907 (+)	20,436 bp