Gm54052 Gene Detail

Summary

• Symbol
  Gm54052
• Name
  predicted gene, 54052

• Feature Type
  lncRNA gene
• IDs
  MGI:6723135
  NCBI Gene: 118568402
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr19:6995287-7009424 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  455 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723135	lncRNA gene	Chr19:6992319-7009424 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm54052
  

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000138644 (Evidence)
• NCBI Gene
  118568402

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000138644	Ensembl Gene Model | MGI Sequence Detail	14138	C57BL/6J
transcript	ENSMUST00000348988	Ensembl | MGI Sequence Detail	1597	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54052:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154723	Chr19:6995278-6995298 (+)	1 bp
Tssr154724	Chr19:6995329-6995340 (+)	48 bp
Tssr154725	Chr19:6995677-6995701 (+)	402 bp
Tssr154726	Chr19:6996060-6996099 (+)	793 bp
Tssr154727	Chr19:6996120-6996137 (+)	842 bp
Tssr154728	Chr19:6996152-6996165 (+)	872 bp
Tssr154729	Chr19:6996183-6996195 (+)	902 bp
Tssr154730	Chr19:7003006-7003020 (+)	7,726 bp