Gm54121 Gene Detail

Summary

• Symbol
  Gm54121
• Name
  predicted gene, 54121

• Feature Type
  lncRNA gene
• IDs
  MGI:6723266
  NCBI Gene: 118568522
• Alliance
  gene page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr2:145703106-145717493 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  391 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723266	lncRNA gene	Chr2:145703106-145717493 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118568522

Representative Sequences			Length	Strain/Species
genomic	118568522	NCBI Gene Model | MGI Sequence Detail	14388	C57BL/6J
transcript	XR_004940958	RefSeq | MGI Sequence Detail	3280	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm54121:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20577	Chr2:145701954-145701977 (+)	-1,140 bp
Tssr20578	Chr2:145702061-145702076 (+)	-1,037 bp
Tssr20579	Chr2:145702081-145702095 (+)	-1,018 bp
Tssr20580	Chr2:145702152-145702166 (+)	-947 bp
Tssr20581	Chr2:145702273-145702288 (+)	-825 bp
Tssr20582	Chr2:145702405-145702441 (+)	-683 bp
Tssr20583	Chr2:145702573-145702619 (+)	-510 bp
Tssr20584	Chr2:145702622-145702645 (+)	-472 bp
Tssr20585	Chr2:145702654-145702667 (+)	-445 bp
Tssr20586	Chr2:145702680-145702683 (+)	-424 bp
Tssr20587	Chr2:145702799-145702806 (+)	-303 bp
Tssr20588	Chr2:145702811-145702824 (+)	-288 bp
Tssr20589	Chr2:145702836-145702845 (+)	-265 bp
Tssr20590	Chr2:145714396-145714421 (+)	11,303 bp