Gm54270 Gene Detail

Summary

• Symbol
  Gm54270
• Name
  predicted gene, 54270

• Feature Type
  lncRNA gene
• IDs
  MGI:6723562
  NCBI Gene: 118568707
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:149930072-149940480 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723562	lncRNA gene	Chr4:149930072-149940480 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118568707

Representative Sequences			Length	Strain/Species
genomic	118568707	NCBI Gene Model | MGI Sequence Detail	10409	C57BL/6J
transcript	XR_004942232	RefSeq | MGI Sequence Detail	539	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm54270:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44693	Chr4:149940923-149940937 (-)	-450 bp
Tssr44692	Chr4:149940742-149940746 (-)	-264 bp
Tssr44691	Chr4:149938923-149938929 (-)	1,554 bp
Tssr44690	Chr4:149938532-149938540 (-)	1,944 bp
Tssr44689	Chr4:149934671-149934674 (-)	5,807 bp