Gm54296 Gene Detail

Summary

• Symbol
  Gm54296
• Name
  predicted gene, 54296

• Feature Type
  lncRNA gene
• IDs
  MGI:6723612
  NCBI Gene: 118568741
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr5:44009896-44026001 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  556 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723612	lncRNA gene	Chr5:44009896-44026001 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  118568741

Representative Sequences			Length	Strain/Species
genomic	118568741	NCBI Gene Model | MGI Sequence Detail	16106	C57BL/6J
transcript	XR_004942628	RefSeq | MGI Sequence Detail	1342	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm54296:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50870	Chr5:44026802-44026834 (-)	-817 bp
Tssr50869	Chr5:44026470-44026481 (-)	-475 bp
Tssr50868	Chr5:44026090-44026104 (-)	-96 bp
Tssr50867	Chr5:44026029-44026041 (-)	-34 bp
Tssr50866	Chr5:44025156-44025168 (-)	839 bp