Gm54573 Gene Detail

Summary

• Symbol
  Gm54573
• Name
  predicted gene, 54573

• Feature Type
  miRNA gene
• IDs
  MGI:6845624
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr12:113388770-113388847 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845624	miRNA gene	Chr12:113388770-113388847 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm54573
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00002076091 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076091	Ensembl Gene Model | MGI Sequence Detail	78	C57BL/6J
transcript	ENSMUST00020182163	Ensembl | MGI Sequence Detail	78	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54573:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117993	Chr12:113389612-113389650 (-)	-784 bp
Tssr117992	Chr12:113389544-113389589 (-)	-720 bp
Tssr117991	Chr12:113389412-113389458 (-)	-588 bp
Tssr117990	Chr12:113389385-113389396 (-)	-544 bp
Tssr117989	Chr12:113389328-113389352 (-)	-493 bp
Tssr117988	Chr12:113389299-113389314 (-)	-460 bp
Tssr117987	Chr12:113389096-113389118 (-)	-260 bp
Tssr117986	Chr12:113389040-113389054 (-)	-200 bp
Tssr117985	Chr12:113388981-113389010 (-)	-149 bp