Gm54686 Gene Detail

Summary

• Symbol
  Gm54686
• Name
  predicted gene, 54686

• Feature Type
  miRNA gene
• IDs
  MGI:6845850
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr15:74435670-74435764 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845850	miRNA gene	Chr15:74435670-74435764 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm54686
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00002076923 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076923	Ensembl Gene Model | MGI Sequence Detail	95	C57BL/6J
transcript	ENSMUST00020182266	Ensembl | MGI Sequence Detail	95	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54686:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131561	Chr15:74435232-74435241 (+)	-433 bp
Tssr131562	Chr15:74435348-74435396 (+)	-298 bp
Tssr4625	Chr15:74435400-74435410 (+)	-265 bp
Tssr131563	Chr15:74435519-74435545 (+)	-138 bp
Tssr131564	Chr15:74435587-74435674 (+)	-39 bp