Gm55521 Gene Detail

Summary

• Symbol
  Gm55521
• Name
  predicted gene, 55521

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6847511
• Alliance
  gene page
• Transcription Start Sites
  49 TSS

Location &
Maps

• Sequence Map
  Chr19:5849028-5849113 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6847511	unclassified non-coding RNA gene	Chr19:5849028-5849113 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm55521
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00002076626 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076626	Ensembl Gene Model | MGI Sequence Detail	86	C57BL/6J
transcript	ENSMUST00020182077	Ensembl | MGI Sequence Detail	86	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55521:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157734	Chr19:5850879-5850885 (-)	-1,769 bp
Tssr157733	Chr19:5850862-5850873 (-)	-1,755 bp
Tssr157732	Chr19:5850825-5850830 (-)	-1,715 bp
Tssr157731	Chr19:5850782-5850794 (-)	-1,675 bp
Tssr157730	Chr19:5850759-5850769 (-)	-1,651 bp
Tssr157729	Chr19:5850629-5850640 (-)	-1,522 bp
Tssr157728	Chr19:5850430-5850440 (-)	-1,322 bp
Tssr157727	Chr19:5850333-5850347 (-)	-1,227 bp
Tssr157726	Chr19:5850318-5850329 (-)	-1,211 bp
Tssr157725	Chr19:5850313-5850316 (-)	-1,202 bp
Tssr157724	Chr19:5850267-5850273 (-)	-1,157 bp
Tssr157723	Chr19:5850258-5850261 (-)	-1,147 bp
Tssr5420	Chr19:5850208-5850215 (-)	-1,099 bp
Tssr5419	Chr19:5850191-5850201 (-)	-1,083 bp
Tssr157722	Chr19:5850183-5850190 (-)	-1,074 bp
Tssr157721	Chr19:5850166-5850177 (-)	-1,059 bp
Tssr157720	Chr19:5850130-5850142 (-)	-1,023 bp
Tssr157719	Chr19:5850111-5850120 (-)	-1,003 bp
Tssr157718	Chr19:5850057-5850071 (-)	-951 bp
Tssr157717	Chr19:5850012-5850030 (-)	-908 bp
Tssr157716	Chr19:5849985-5849996 (-)	-878 bp
Tssr157715	Chr19:5849941-5849952 (-)	-834 bp
Tssr157714	Chr19:5849924-5849940 (-)	-819 bp
Tssr157713	Chr19:5849873-5849884 (-)	-766 bp
Tssr157712	Chr19:5849846-5849857 (-)	-739 bp
Tssr157711	Chr19:5849809-5849824 (-)	-704 bp
Tssr157710	Chr19:5849790-5849802 (-)	-683 bp
Tssr157709	Chr19:5849771-5849784 (-)	-665 bp
Tssr157708	Chr19:5849759-5849766 (-)	-650 bp
Tssr157707	Chr19:5849749-5849754 (-)	-639 bp
Tssr157706	Chr19:5849703-5849718 (-)	-598 bp
Tssr157705	Chr19:5849655-5849673 (-)	-551 bp
Tssr157704	Chr19:5849634-5849643 (-)	-526 bp
Tssr157703	Chr19:5849608-5849622 (-)	-502 bp
Tssr157702	Chr19:5849557-5849564 (-)	-448 bp
Tssr5418	Chr19:5849537-5849539 (-)	-425 bp
Tssr157701	Chr19:5849521-5849528 (-)	-412 bp
Tssr157700	Chr19:5849503-5849514 (-)	-396 bp
Tssr157699	Chr19:5849454-5849470 (-)	-349 bp
Tssr157698	Chr19:5849396-5849410 (-)	-290 bp
Tssr157697	Chr19:5849380-5849394 (-)	-274 bp
Tssr157696	Chr19:5849331-5849338 (-)	-222 bp
Tssr157695	Chr19:5849310-5849321 (-)	-203 bp
Tssr157694	Chr19:5849246-5849258 (-)	-139 bp
Tssr157693	Chr19:5849188-5849195 (-)	-79 bp
Tssr157692	Chr19:5849131-5849165 (-)	-35 bp
Tssr157691	Chr19:5849077-5849084 (-)	32 bp
Tssr5417	Chr19:5849054-5849058 (-)	57 bp
Tssr157690	Chr19:5849031-5849036 (-)	79 bp