Gm55977 Gene Detail

Summary

• Symbol
  Gm55977
• Name
  predicted gene, 55977

• Feature Type
  rRNA gene
• IDs
  MGI:6848414
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr5:91041239-91041355 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848414	rRNA gene	Chr5:91041239-91041355 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm55977
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00002075252 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075252	Ensembl Gene Model | MGI Sequence Detail	117	C57BL/6J
transcript	ENSMUST00020183672	Ensembl | MGI Sequence Detail	117	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55977:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47217	Chr5:91040339-91040350 (+)	-894 bp
Tssr47218	Chr5:91040360-91040377 (+)	-870 bp
Tssr47219	Chr5:91040378-91040473 (+)	-813 bp
Tssr47220	Chr5:91040474-91040499 (+)	-752 bp
Tssr47221	Chr5:91040513-91040525 (+)	-720 bp
Tssr47222	Chr5:91040584-91040594 (+)	-650 bp
Tssr47223	Chr5:91040983-91040992 (+)	-251 bp