Gm56421 Gene Detail

Summary

• Symbol
  Gm56421
• Name
  predicted gene, 56421

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6849300
• Alliance
  gene page
• Transcription Start Sites
  13 TSS

Location &
Maps

• Sequence Map
  Chr7:142131586-142131655 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6849300	unclassified non-coding RNA gene	Chr7:142131586-142131655 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56421
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00002075214 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075214	Ensembl Gene Model | MGI Sequence Detail	70	C57BL/6J
transcript	ENSMUST00020182797	Ensembl | MGI Sequence Detail	70	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr70215	Chr7:142130685-142130713 (+)	-887 bp
Tssr70216	Chr7:142130722-142130777 (+)	-836 bp
Tssr70217	Chr7:142130779-142130794 (+)	-799 bp
Tssr2460	Chr7:142130980-142130997 (+)	-597 bp
Tssr70218	Chr7:142131110-142131144 (+)	-459 bp
Tssr70219	Chr7:142131149-142131182 (+)	-420 bp
Tssr70220	Chr7:142131242-142131294 (+)	-318 bp
Tssr70221	Chr7:142131323-142131333 (+)	-258 bp
Tssr70222	Chr7:142131338-142131391 (+)	-221 bp
Tssr70223	Chr7:142131510-142131533 (+)	-64 bp
Tssr70224	Chr7:142131567-142131578 (+)	-13 bp
Tssr70225	Chr7:142131605-142131616 (+)	25 bp
Tssr2461	Chr7:142131648-142131663 (+)	70 bp