Rr209 Other Genome Feature Detail

Summary

• Symbol
  Rr209
• Name
  regulatory region 209
• Synonyms
  Nkx2-2-2kb, Nkx2-2 enhancer

• Feature Type
  enhancer
• IDs
  MGI:7327531
• Regulates expression of
  Nkx2-2 (1 regulated gene)

Location &
Maps

• Sequence Map
  Chr2:147029932-147030639 bp

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI
• J:112802: XbaI-SalI restriction fragment 2 kb upstream of TSS chr2:147030041-147030462 (GRCm39) (Gli2- and Tcf4-binding sites) chr2:147013748-147014455 (mm9) transgene insert; table in J:316612 (chr2:147029932-147030639 GRCm39)

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  65 from dbSNP Build 142

References

• Summaries
  All 3
• Earliest
  J:112802 Lei Q, et al., Wnt signaling inhibitors regulate the transcriptional response to morphogenetic Shh-Gli signaling in the neural tube. Dev Cell. 2006 Sep;11(3):325-37
• Latest
  J:316612 Peterson KA, et al., Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning. Genes Dev. 2012 Dec 15;26(24):2802-16

Rr209 regulates expression of:

Feature	Feature Type	Location	Reference
Nkx2-2, NK2 homeobox 2	protein coding gene	Chr2:147019466-147036163 (-)	J:112802