Gm56530 Gene Detail

Summary

• Symbol
  Gm56530
• Name
  predicted gene, 56530

• Feature Type
  lncRNA gene
• IDs
  MGI:7336974
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:80160546-80162528 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336974	lncRNA gene	Chr12:80160546-80162528 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56530
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4

• Ensembl
  ENSMUSG00000120387 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120387	Ensembl Gene Model | MGI Sequence Detail	1983	C57BL/6J
transcript	ENSMUST00000244971	Ensembl | MGI Sequence Detail	445	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm56530:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116863	Chr12:80163693-80163715 (-)	-1,176 bp
Tssr116862	Chr12:80162469-80162485 (-)	51 bp
Tssr116858	Chr12:80161293-80161310 (-)	1,226 bp
Tssr116857	Chr12:80161245-80161260 (-)	1,275 bp