Gm56536 Gene Detail

Summary

• Symbol
  Gm56536
• Name
  predicted gene, 56536

• Feature Type
  lncRNA gene
• IDs
  MGI:7336986
• Alliance
  gene page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr12:113389913-113390546 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336986	lncRNA gene	Chr12:113389913-113390546 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56536
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120754 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120754	Ensembl Gene Model | MGI Sequence Detail	634	C57BL/6J
transcript	ENSMUST00000245607	Ensembl | MGI Sequence Detail	634	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56536:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3973	Chr12:113391143-113391151 (-)	-601 bp
Tssr3972	Chr12:113391130-113391133 (-)	-586 bp
Tssr3971	Chr12:113391086-113391093 (-)	-544 bp
Tssr118004	Chr12:113391027-113391042 (-)	-489 bp
Tssr118003	Chr12:113390952-113391016 (-)	-438 bp
Tssr118002	Chr12:113390937-113390950 (-)	-398 bp
Tssr118001	Chr12:113390905-113390914 (-)	-364 bp
Tssr118000	Chr12:113390580-113390591 (-)	-40 bp
Tssr117999	Chr12:113390536-113390567 (-)	-6 bp
Tssr117998	Chr12:113390510-113390526 (-)	28 bp
Tssr117997	Chr12:113390443-113390502 (-)	73 bp
Tssr117996	Chr12:113390403-113390414 (-)	137 bp
Tssr117995	Chr12:113390387-113390400 (-)	152 bp
Tssr117994	Chr12:113390311-113390321 (-)	230 bp