Gm56541 Gene Detail

Summary

• Symbol
  Gm56541
• Name
  predicted gene, 56541

• Feature Type
  lncRNA gene
• IDs
  MGI:7336996
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr12:85530789-85532867 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7336996	lncRNA gene	Chr12:85530789-85532867 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56541
  

Sequences &
Gene Models

• All Sequences
  6

• Ensembl
  ENSMUSG00000120835 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120835	Ensembl Gene Model | MGI Sequence Detail	2079	C57BL/6J
transcript	ENSMUST00000246030	Ensembl | MGI Sequence Detail	904	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56541:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3900	Chr12:85534615-85534627 (-)	-1,754 bp
Tssr117094	Chr12:85532754-85532768 (-)	106 bp
Tssr117093	Chr12:85532729-85532740 (-)	132 bp
Tssr117092	Chr12:85532702-85532713 (-)	159 bp
Tssr117091	Chr12:85532565-85532581 (-)	294 bp