Gm56557 Gene Detail

Summary

• Symbol
  Gm56557
• Name
  predicted gene, 56557

• Feature Type
  lncRNA gene
• IDs
  MGI:7337028
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr12:85571385-85572160 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337028	lncRNA gene	Chr12:85571385-85572160 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56557
  

Sequences &
Gene Models

• All Sequences
  5

• Ensembl
  ENSMUSG00000120232 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120232	Ensembl Gene Model | MGI Sequence Detail	776	C57BL/6J
transcript	ENSMUST00000243227	Ensembl | MGI Sequence Detail	759	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56557:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114408	Chr12:85571427-85571438 (+)	48 bp
Tssr114409	Chr12:85571443-85571457 (+)	65 bp
Tssr114410	Chr12:85571463-85571487 (+)	90 bp
Tssr114411	Chr12:85571489-85571516 (+)	118 bp
Tssr114412	Chr12:85571605-85571615 (+)	225 bp