Gm56621 Gene Detail

Summary

• Symbol
  Gm56621
• Name
  predicted gene, 56621

• Feature Type
  lncRNA gene
• IDs
  MGI:7337156
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr16:49674861-49675662 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337156	lncRNA gene	Chr16:49674861-49675662 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56621
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120744 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120744	Ensembl Gene Model | MGI Sequence Detail	802	C57BL/6J
transcript	ENSMUST00000245507	Ensembl | MGI Sequence Detail	802	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56621:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138723	Chr16:49673517-49673540 (+)	-1,332 bp
Tssr138724	Chr16:49674710-49674722 (+)	-145 bp
Tssr138725	Chr16:49674900-49674907 (+)	43 bp
Tssr138726	Chr16:49675452-49675463 (+)	597 bp
Tssr4899	Chr16:49675469-49675479 (+)	613 bp
Tssr138727	Chr16:49675482-49675493 (+)	627 bp
Tssr4900	Chr16:49675623-49675629 (+)	765 bp