Gm56629 Gene Detail

Summary

• Symbol
  Gm56629
• Name
  predicted gene, 56629

• Feature Type
  lncRNA gene
• IDs
  MGI:7337172
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:93770681-93771335 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337172	lncRNA gene	Chr16:93770681-93771335 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56629
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm56629
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000121032 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121032	Ensembl Gene Model | MGI Sequence Detail	655	C57BL/6J
transcript	ENSMUST00000246938	Ensembl | MGI Sequence Detail	655	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:343786 Lana-Elola E, et al., Congenital heart defects in Down syndrome are caused by increased dosage of DYRK1A. bioRxiv. 2023;
• Latest
  J:345472 Lana-Elola E, et al., Increased dosage of DYRK1A leads to congenital heart defects in a mouse model of Down syndrome. Sci Transl Med. 2024 Jan 24;16(731):eadd6883

TSS for Gm56629:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139534	Chr16:93770651-93770685 (+)	-13 bp