Gm56633 Gene Detail

Summary

• Symbol
  Gm56633
• Name
  predicted gene, 56633

• Feature Type
  lncRNA gene
• IDs
  MGI:7337180
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr19:9932071-9932814 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337180	lncRNA gene	Chr19:9932071-9932814 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56633
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120136 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120136	Ensembl Gene Model | MGI Sequence Detail	744	C57BL/6J
transcript	ENSMUST00000241549	Ensembl | MGI Sequence Detail	744	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56633:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154987	Chr19:9932047-9932082 (+)	-6 bp
Tssr154988	Chr19:9932117-9932145 (+)	60 bp
Tssr154989	Chr19:9932206-9932219 (+)	142 bp
Tssr154990	Chr19:9932236-9932252 (+)	173 bp
Tssr154991	Chr19:9932450-9932460 (+)	384 bp
Tssr154992	Chr19:9932498-9932510 (+)	433 bp