Gm56639 Gene Detail

Summary

• Symbol
  Gm56639
• Name
  predicted gene, 56639

• Feature Type
  lncRNA gene
• IDs
  MGI:7337192
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr19:23113154-23113861 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337192	lncRNA gene	Chr19:23113154-23113861 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56639
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120011 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120011	Ensembl Gene Model | MGI Sequence Detail	708	C57BL/6J
transcript	ENSMUST00000241018	Ensembl | MGI Sequence Detail	708	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56639:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158620	Chr19:23114145-23114149 (-)	-286 bp
Tssr158619	Chr19:23113911-23113956 (-)	-73 bp
Tssr158618	Chr19:23113888-23113899 (-)	-33 bp
Tssr158617	Chr19:23113848-23113865 (-)	4 bp
Tssr158616	Chr19:23113729-23113747 (-)	123 bp
Tssr158615	Chr19:23113641-23113667 (-)	207 bp
Tssr158614	Chr19:23113625-23113635 (-)	231 bp
Tssr158613	Chr19:23113535-23113540 (-)	323 bp