Gm56642 Gene Detail

Summary

• Symbol
  Gm56642
• Name
  predicted gene, 56642

• Feature Type
  lncRNA gene
• IDs
  MGI:7337198
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr19:9959115-9959934 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337198	lncRNA gene	Chr19:9959115-9959934 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56642
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120067 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120067	Ensembl Gene Model | MGI Sequence Detail	820	C57BL/6J
transcript	ENSMUST00000241200	Ensembl | MGI Sequence Detail	820	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56642:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158138	Chr19:9961629-9961690 (-)	-1,726 bp
Tssr158137	Chr19:9961583-9961601 (-)	-1,658 bp
Tssr158136	Chr19:9960255-9960304 (-)	-346 bp
Tssr158135	Chr19:9959910-9959931 (-)	13 bp
Tssr158134	Chr19:9959876-9959895 (-)	48 bp
Tssr158133	Chr19:9959848-9959870 (-)	75 bp
Tssr158132	Chr19:9959805-9959813 (-)	125 bp
Tssr158131	Chr19:9959789-9959799 (-)	140 bp