Gm56697 Gene Detail

Summary

• Symbol
  Gm56697
• Name
  predicted gene, 56697

• Feature Type
  lncRNA gene
• IDs
  MGI:7337308
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr15:59517539-59521471 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337308	lncRNA gene	Chr15:59517539-59521471 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56697
  

Sequences &
Gene Models

• All Sequences
  11

• Ensembl
  ENSMUSG00000120225 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120225	Ensembl Gene Model | MGI Sequence Detail	3933	C57BL/6J
transcript	ENSMUST00000241974	Ensembl | MGI Sequence Detail	1770	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56697:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134446	Chr15:59522452-59522463 (-)	-987 bp
Tssr4603	Chr15:59522119-59522126 (-)	-652 bp
Tssr134445	Chr15:59519991-59520017 (-)	1,467 bp
Tssr134444	Chr15:59519944-59519985 (-)	1,506 bp
Tssr134443	Chr15:59518203-59518207 (-)	3,266 bp