Gm56740 Gene Detail

Summary

• Symbol
  Gm56740
• Name
  predicted gene, 56740

• Feature Type
  lncRNA gene
• IDs
  MGI:7337393
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr15:96538943-96540068 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337393	lncRNA gene	Chr15:96538943-96540068 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56740
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000121185 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121185	Ensembl Gene Model | MGI Sequence Detail	1126	C57BL/6J
transcript	ENSMUST00000247408	Ensembl | MGI Sequence Detail	1126	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56740:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132834	Chr15:96538936-96538951 (+)	1 bp
Tssr132835	Chr15:96539189-96539209 (+)	256 bp
Tssr132836	Chr15:96539510-96539521 (+)	573 bp
Tssr132837	Chr15:96539548-96539628 (+)	645 bp