Gm56743 Gene Detail

Summary

• Symbol
  Gm56743
• Name
  predicted gene, 56743

• Feature Type
  lncRNA gene
• IDs
  MGI:7337399
• Alliance
  gene page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr15:36770505-36770882 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  81 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337399	lncRNA gene	Chr15:36770505-36770882 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56743
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120390 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120390	Ensembl Gene Model | MGI Sequence Detail	378	C57BL/6J
transcript	ENSMUST00000242986	Ensembl | MGI Sequence Detail	378	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56743:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134057	Chr15:36771788-36771799 (-)	-912 bp
Tssr134056	Chr15:36771699-36771719 (-)	-827 bp
Tssr134055	Chr15:36771638-36771661 (-)	-768 bp
Tssr134054	Chr15:36771600-36771615 (-)	-726 bp
Tssr134053	Chr15:36771557-36771568 (-)	-681 bp
Tssr134052	Chr15:36771521-36771535 (-)	-646 bp
Tssr134051	Chr15:36771489-36771516 (-)	-621 bp
Tssr134050	Chr15:36771421-36771442 (-)	-550 bp
Tssr134049	Chr15:36771340-36771419 (-)	-498 bp
Tssr134048	Chr15:36771300-36771331 (-)	-434 bp
Tssr134047	Chr15:36771239-36771254 (-)	-365 bp
Tssr134046	Chr15:36771207-36771218 (-)	-331 bp
Tssr134045	Chr15:36770847-36770870 (-)	23 bp
Tssr134044	Chr15:36770607-36770612 (-)	272 bp