Gm56779 Gene Detail

Summary

• Symbol
  Gm56779
• Name
  predicted gene, 56779

• Feature Type
  lncRNA gene
• IDs
  MGI:7337471
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr3:88040771-88050937 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337471	lncRNA gene	Chr3:88040771-88050937 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56779
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120121 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120121	Ensembl Gene Model | MGI Sequence Detail	10167	C57BL/6J
transcript	ENSMUST00000282496	Ensembl | MGI Sequence Detail	3212	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm56779:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33989	Chr3:88050927-88050938 (-)	4 bp
Tssr33988	Chr3:88050516-88050536 (-)	411 bp
Tssr33987	Chr3:88049481-88049501 (-)	1,446 bp
Tssr33986	Chr3:88048933-88048946 (-)	1,997 bp
Tssr33985	Chr3:88047236-88047252 (-)	3,693 bp
Tssr33984	Chr3:88046740-88046774 (-)	4,180 bp