Gm56780 Gene Detail

Summary

• Symbol
  Gm56780
• Name
  predicted gene, 56780

• Feature Type
  lncRNA gene
• IDs
  MGI:7337473
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr3:38939841-38940376 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337473	lncRNA gene	Chr3:38939841-38940376 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56780
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120375 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120375	Ensembl Gene Model | MGI Sequence Detail	536	C57BL/6J
transcript	ENSMUST00000242855	Ensembl | MGI Sequence Detail	536	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56780:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28930	Chr3:38939461-38939480 (+)	-370 bp
Tssr28931	Chr3:38939832-38939851 (+)	1 bp
Tssr28932	Chr3:38939859-38939877 (+)	27 bp
Tssr28933	Chr3:38939891-38939913 (+)	61 bp
Tssr28934	Chr3:38939992-38940003 (+)	157 bp
Tssr28935	Chr3:38940025-38940036 (+)	190 bp
Tssr28936	Chr3:38940037-38940054 (+)	205 bp