Gm56800 Gene Detail

Summary

• Symbol
  Gm56800
• Name
  predicted gene, 56800

• Feature Type
  lncRNA gene
• IDs
  MGI:7337513
• Alliance
  gene page
• Transcription Start Sites
  21 TSS

Location &
Maps

• Sequence Map
  Chr3:93350381-93352101 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337513	lncRNA gene	Chr3:93350381-93352101 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56800
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000120868 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120868	Ensembl Gene Model | MGI Sequence Detail	1721	C57BL/6J
transcript	ENSMUST00000246212	Ensembl | MGI Sequence Detail	1721	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56800:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34372	Chr3:93353515-93353525 (-)	-1,419 bp
Tssr34371	Chr3:93352752-93352864 (-)	-707 bp
Tssr34370	Chr3:93352698-93352721 (-)	-609 bp
Tssr34369	Chr3:93352684-93352695 (-)	-589 bp
Tssr34368	Chr3:93352659-93352669 (-)	-563 bp
Tssr34367	Chr3:93352580-93352639 (-)	-509 bp
Tssr34366	Chr3:93352447-93352474 (-)	-360 bp
Tssr34365	Chr3:93352387-93352406 (-)	-296 bp
Tssr34364	Chr3:93352373-93352380 (-)	-276 bp
Tssr34363	Chr3:93352356-93352365 (-)	-260 bp
Tssr34362	Chr3:93352329-93352340 (-)	-234 bp
Tssr34361	Chr3:93352280-93352327 (-)	-203 bp
Tssr34360	Chr3:93352259-93352270 (-)	-164 bp
Tssr34359	Chr3:93352178-93352225 (-)	-101 bp
Tssr34358	Chr3:93352109-93352150 (-)	-29 bp
Tssr34357	Chr3:93352057-93352091 (-)	27 bp
Tssr34356	Chr3:93352012-93352026 (-)	82 bp
Tssr34355	Chr3:93351340-93351345 (-)	758 bp
Tssr34354	Chr3:93351202-93351248 (-)	876 bp
Tssr34353	Chr3:93351192-93351197 (-)	906 bp
Tssr34352	Chr3:93351171-93351191 (-)	920 bp