Gm56830 Gene Detail

Summary

• Symbol
  Gm56830
• Name
  predicted gene, 56830

• Feature Type
  lncRNA gene
• IDs
  MGI:7337573
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr8:84917967-84925214 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337573	lncRNA gene	Chr8:84917967-84925214 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56830
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  16
• Gene trapped
  16
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  12

• Ensembl
  ENSMUSG00000120586 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120586	Ensembl Gene Model | MGI Sequence Detail	7248	C57BL/6J
transcript	ENSMUST00000244364	Ensembl | MGI Sequence Detail	1861	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56830:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82081	Chr8:84925032-84925052 (-)	172 bp
Tssr82080	Chr8:84924997-84925023 (-)	204 bp
Tssr82079	Chr8:84924980-84924993 (-)	227 bp
Tssr82078	Chr8:84924554-84924588 (-)	643 bp
Tssr82077	Chr8:84924304-84924309 (-)	907 bp
Tssr82076	Chr8:84924208-84924222 (-)	999 bp
Tssr2623	Chr8:84924096-84924107 (-)	1,112 bp
Tssr82075	Chr8:84919293-84919309 (-)	5,913 bp
Tssr82074	Chr8:84918689-84918737 (-)	6,501 bp