Gm56837 Gene Detail

Summary

• Symbol
  Gm56837
• Name
  predicted gene, 56837

• Feature Type
  lncRNA gene
• IDs
  MGI:7337587
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr8:120145702-120152108 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  345 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337587	lncRNA gene	Chr8:120145702-120152108 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56837
  

Sequences &
Gene Models

• All Sequences
  9

• Ensembl
  ENSMUSG00000120688 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120688	Ensembl Gene Model | MGI Sequence Detail	6407	C57BL/6J
transcript	ENSMUST00000323531	Ensembl | MGI Sequence Detail	1473	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56837:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79684	Chr8:120144117-120144133 (+)	-1,577 bp
Tssr79685	Chr8:120145691-120145696 (+)	-8 bp
Tssr79686	Chr8:120145722-120145726 (+)	22 bp
Tssr79687	Chr8:120145752-120145757 (+)	53 bp
Tssr2702	Chr8:120145766-120145771 (+)	67 bp
Tssr79688	Chr8:120145780-120145791 (+)	84 bp
Tssr2703	Chr8:120150727-120150742 (+)	5,033 bp
Tssr79689	Chr8:120151200-120151220 (+)	5,508 bp