Gm56849 Gene Detail

Summary

• Symbol
  Gm56849
• Name
  predicted gene, 56849

• Feature Type
  lncRNA gene
• IDs
  MGI:7337611
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr8:57889414-57889914 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337611	lncRNA gene	Chr8:57889414-57889914 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56849
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000119998 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119998	Ensembl Gene Model | MGI Sequence Detail	501	C57BL/6J
transcript	ENSMUST00000240970	Ensembl | MGI Sequence Detail	501	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56849:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77417	Chr8:57889408-57889423 (+)	2 bp
Tssr77418	Chr8:57889429-57889449 (+)	25 bp
Tssr77419	Chr8:57889467-57889481 (+)	60 bp
Tssr77420	Chr8:57889492-57889497 (+)	81 bp
Tssr77421	Chr8:57889520-57889525 (+)	109 bp