Gm56878 Gene Detail

Summary

• Symbol
  Gm56878
• Name
  predicted gene, 56878

• Feature Type
  lncRNA gene
• IDs
  MGI:7337669
• Alliance
  gene page
• Transcription Start Sites
  18 TSS

Location &
Maps

• Sequence Map
  Chr8:118186456-118188251 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337669	lncRNA gene	Chr8:118186456-118188251 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56878
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000121141 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121141	Ensembl Gene Model | MGI Sequence Detail	1796	C57BL/6J
transcript	ENSMUST00000247268	Ensembl | MGI Sequence Detail	1796	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56878:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79617	Chr8:118186063-118186075 (+)	-387 bp
Tssr79618	Chr8:118186080-118186101 (+)	-365 bp
Tssr79619	Chr8:118186114-118186146 (+)	-326 bp
Tssr79620	Chr8:118186456-118186482 (+)	13 bp
Tssr79621	Chr8:118186516-118186524 (+)	64 bp
Tssr79622	Chr8:118186960-118186975 (+)	512 bp
Tssr79623	Chr8:118187079-118187088 (+)	628 bp
Tssr79624	Chr8:118187156-118187158 (+)	701 bp
Tssr79625	Chr8:118187265-118187279 (+)	816 bp
Tssr79626	Chr8:118187338-118187386 (+)	906 bp
Tssr79627	Chr8:118187470-118187496 (+)	1,027 bp
Tssr79628	Chr8:118187534-118187551 (+)	1,087 bp
Tssr79629	Chr8:118187595-118187620 (+)	1,152 bp
Tssr79630	Chr8:118187688-118187728 (+)	1,252 bp
Tssr79631	Chr8:118187803-118187834 (+)	1,363 bp
Tssr79632	Chr8:118187840-118187866 (+)	1,397 bp
Tssr79633	Chr8:118187878-118187897 (+)	1,432 bp
Tssr79634	Chr8:118187922-118187969 (+)	1,490 bp