Gm56882 Gene Detail

Summary

• Symbol
  Gm56882
• Name
  predicted gene, 56882

• Feature Type
  lncRNA gene
• IDs
  MGI:7337677
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:45883445-45915325 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  894 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337677	lncRNA gene	Chr17:45883445-45915325 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56882
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  34
• Gene trapped
  34
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  11

• Ensembl
  ENSMUSG00000120274 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120274	Ensembl Gene Model | MGI Sequence Detail	31881	C57BL/6J
transcript	ENSMUST00000242222	Ensembl | MGI Sequence Detail	2355	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56882:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144804	Chr17:45881434-45881462 (+)	-1,997 bp
Tssr144805	Chr17:45881648-45881655 (+)	-1,793 bp