Gm56904 Gene Detail

Summary

• Symbol
  Gm56904
• Name
  predicted gene, 56904

• Feature Type
  lncRNA gene
• IDs
  MGI:7337721
• Alliance
  gene page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr17:71157595-71183721 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  814 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337721	lncRNA gene	Chr17:71157595-71183721 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56904
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  95
• Gene trapped
  95
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000121122 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121122	Ensembl Gene Model | MGI Sequence Detail	26127	C57BL/6J
transcript	ENSMUST00000242145	Ensembl | MGI Sequence Detail	1951	Not Applicable

References

• Summaries
  All 5

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56904:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145684	Chr17:71156455-71156464 (+)	-1,135 bp
Tssr145685	Chr17:71157152-71157182 (+)	-428 bp
Tssr145686	Chr17:71157690-71157715 (+)	108 bp
Tssr145687	Chr17:71158331-71158359 (+)	750 bp
Tssr145688	Chr17:71159010-71159018 (+)	1,419 bp
Tssr145696	Chr17:71165584-71165594 (+)	7,994 bp
Tssr145697	Chr17:71172109-71172110 (+)	14,515 bp
Tssr145698	Chr17:71172686-71172703 (+)	15,100 bp
Tssr145699	Chr17:71177741-71177755 (+)	20,153 bp
Tssr145700	Chr17:71178923-71178925 (+)	21,329 bp
Tssr145701	Chr17:71180502-71180549 (+)	22,931 bp