Gm56907 Gene Detail

Summary

• Symbol
  Gm56907
• Name
  predicted gene, 56907

• Feature Type
  lncRNA gene
• IDs
  MGI:7337727
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr17:57385553-57405588 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  578 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337727	lncRNA gene	Chr17:57385553-57405588 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56907
  

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000119983 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119983	Ensembl Gene Model | MGI Sequence Detail	20036	C57BL/6J
transcript	ENSMUST00000240925	Ensembl | MGI Sequence Detail	828	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56907:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145371	Chr17:57385566-57385609 (+)	35 bp
Tssr5182	Chr17:57387219-57387244 (+)	1,679 bp
Tssr145372	Chr17:57387247-57387285 (+)	1,713 bp
Tssr145373	Chr17:57387594-57387605 (+)	2,047 bp
Tssr145374	Chr17:57387688-57387721 (+)	2,152 bp